mrkselset

Changes the set and the default order of currently active markers.

Synopsis:

The mrkselset command is invoked either as:

• mrkselset Options
• mrkselset List of markers id

Description:

the command sets the list of currently active markers to the list of markers received as argument. The order of the markers in the list is used as the default order by some commands (such as sem).

If the set of the markers chosen differs from the previous list of active markers (available through mrkselget), then the current heap of maps becomes obsolete and is therefore emptied and reset.

Arguments :

• Options : -u to obtain the synopsys of the normal use, -h to print a one line description, -H to print a short help.
• List of markers id: a list of all the numerical ids of all the markers that will be active.

Returns:

nothing.

Example :

CG> dsload Data/rh.cg
{1 haploid RH 53 118 /homes/thomas/carthagene/test/Data/rh.cg}
CG> group 0.3 3

Linkage Groups :
---------------:
LOD threshold=3.00
Distance threshold=30.00:

 Group ID : Marker ID List ...
        1 : 52
        2 : 42 48 47 45 46 44 43
        3 : 41
        4 : 38
        5 : 37 39
        6 : 36 40
        7 : 35
        8 : 25
        9 : 22
       10 : 19 32 31 28 30 27 26 20 21
       11 : 13 14
       12 : 11 12
       13 : 10 15 16 18 17
       14 : 7
       15 : 6 51 8 53 50 9
       16 : 4 34 33 24 23 5
       17 : 3 29
       18 : 2 49
       19 : 1
19
CG> mrkselset [groupget 10]

CG> sem

Map -1 : log10-likelihood =  -161.87
-------:
 Set : Marker List ...
   1 : G5 G18 G17 G14 G16 G13 G12 G6 G7

See also:

• mrkselget (2.3.13)
• mrkallget (2.3.1)
• groupget (2.3.19)