heaprint

`heaprint`

Display the Heap of maps.

Synopsis :

The CarthaGene heaprint command is invoked as either one of :

heaprint Options
heaprint

heaprint provide a output of the heap of maps. The maps are ordered by loglikelihood. The best map is always the last printed. The informations available are the id of a map, the score, and the ordered list of the markers printed by names. If the data set the maps are computed on, is merged by order, relatives orders for each merged data sets are printed for each maps.

Arguments :

Options : -u to obtain the synopsys of the normal use, -h to print a one line description, -H to print a short help.

Example :

# small heap for the example
CG> heapsize 3

CG> dsload Data/bc1.cg
{1 f2 backcross 17 208 /homes/thomas/carthagene/test/Data/bc1.cg}
CG> sem

Map -1 : log10-likelihood =  -485.24
-------:
 Set : Marker List ...
   1 : MS4 MS5 MS13 MS6 MS11 MS17 MS16 MS8 MS7 MS2 MS3 MS9 MS15 MS12 MS20 M...

CG> flips 3 3.0 1
...
CG> heaprint

Map  0 : log10-likelihood =  -452.11
-------:
 Set : Marker List ...
   1 : MS4 MS5 MS6 MS11 MS13 MS16 MS17 MS8 MS7 MS3 MS2 MS9 MS12 MS15 MS20 M...

Map  1 : log10-likelihood =  -451.97
-------:
 Set : Marker List ...
   1 : MS4 MS5 MS6 MS11 MS13 MS16 MS17 MS8 MS7 MS2 MS3 MS9 MS12 MS15 MS19 M...

Map  2 : log10-likelihood =  -451.32
-------:
 Set : Marker List ...
   1 : MS4 MS5 MS6 MS11 MS13 MS16 MS17 MS8 MS7 MS3 MS2 MS9 MS12 MS15 MS19 M...

CG> dsload Data/rh1.cg
{2 haploid RH 13 118 /homes/thomas/carthagene/test/Data/rh1.cg}
CG> dsmergor 1 2
{3 merged by order 21 326}
CG> sem

Map -1 : log10-likelihood =  -801.56
-------:
 Set : Marker List ...
   1 : MS4 MS5 MS13 MS6 MS11 MS17 MS16 MS8 MS7 MS2 MS3 MS9 MS15 MS12 MS20 M...
   2 : MS4 MS5      MS6                MS8 MS7     MS3 MS9 MS15            ...

CG> flips 3 3.0 1
...
CG> heaprint

Map  0 : log10-likelihood =  -728.39
-------:
 Set : Marker List ...
   1 : MS4 MS5 MS6 MS11 MS13 MS16 MS17 MS7 MS8 MS9 MS3 MS2 MS12 MS15 MS19 M...
   2 : MS4 MS5 MS6                     MS7 MS8 MS9 MS3          MS15       ...

Map  2 : log10-likelihood =  -728.19
-------:
 Set : Marker List ...
   1 : MS4 MS5 MS6 MS11 MS13 MS16 MS17 MS9 MS8 MS7 MS3 MS2 MS12 MS15 MS19 M...
   2 : MS4 MS5 MS6                     MS9 MS8 MS7 MS3          MS15       ...

Map  1 : log10-likelihood =  -727.95
-------:
 Set : Marker List ...
   1 : MS4 MS5 MS6 MS11 MS13 MS16 MS17 MS7 MS9 MS8 MS3 MS2 MS12 MS15 MS19 M...
   2 : MS4 MS5 MS6                     MS7 MS9 MS8 MS3          MS15       ...

`heaprint`

Synopsis :

Description :

Arguments :

Example :

See also :