Authors: Ponsuksili Siriluck, Murani Eduard, Schwerin Manfred, Schellander Karl, Wimmers Klaus,
(Contact: wimmers@fbn-dummerstorf.de ) Affiliation: Leibniz Institute for Farm Animal Biology, Research Unit Molecular Biology, Wilhelm-Stahl-Allee 2, 18196 Dummerstorf, Germany. Title: Identification of expression QTL (eQTL) of genes expressed in porcine M. longissimus dorsi and associated with meat quality traits. Journal: BMC Genomics, 11: 572 (2010)
DOI :
10.1186/1471-2164-11-572 Links:
PubMed | Abstract
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( Related study: none )
Click on each trait to browse further along the related trait ontology tree
Click on each chromosome number to find the detailed QTL information on that chromosome
Number of QTL/association reported by traits:
QTL for Drip loss
Chr.1 : eQTL:21563 , eQTL:21562 , eQTL:21555 . Chr.3 : eQTL:21596 , eQTL:21595 . Chr.4 : eQTL:21609 . Chr.6 : eQTL:21629 , eQTL:21628 , eQTL:21623 , eQTL:21618 . Chr.13 : eQTL:21674 , eQTL:21673 . Chr.14 : eQTL:21684 . Chr.16 : eQTL:21697 . Chr.18 : eQTL:21700 , eQTL:21702 .
QTL for Shear force
Chr.1 : eQTL:21570 , eQTL:21561 . Chr.3 : eQTL:21607 . Chr.16 : eQTL:21699 .
QTL for Muscle conductivity
Chr.1 : eQTL:21567 , eQTL:21565 , eQTL:21566 , eQTL:21564 , eQTL:21559 , eQTL:21556 , eQTL:21553 , eQTL:21552 , eQTL:21551 , eQTL:21550 . Chr.2 : eQTL:21583 , eQTL:21582 , eQTL:21579 , eQTL:21577 , eQTL:21576 , eQTL:21574 , eQTL:21575 , eQTL:21573 , eQTL:21572 . Chr.3 : eQTL:21598 , eQTL:21597 , eQTL:21594 , eQTL:21593 , eQTL:21591 . Chr.5 : eQTL:21616 , eQTL:21617 , eQTL:21614 , eQTL:21613 . Chr.6 : eQTL:21640 , eQTL:21641 , eQTL:21630 , eQTL:21631 , eQTL:21632 , eQTL:21633 , eQTL:21620 , eQTL:21619 . Chr.7 : eQTL:21652 , eQTL:21650 , eQTL:21648 , eQTL:21644 . Chr.8 : eQTL:21653 . Chr.9 : eQTL:21667 , eQTL:21665 , eQTL:21663 , eQTL:21664 , eQTL:21660 , eQTL:21659 , eQTL:21656 , eQTL:21657 , eQTL:21658 , eQTL:21655 . Chr.11 : eQTL:21668 . Chr.12 : eQTL:21669 . Chr.13 : eQTL:21682 , eQTL:21681 , eQTL:21677 , eQTL:21675 , eQTL:21676 . Chr.14 : eQTL:21691 , eQTL:21692 , eQTL:21689 , eQTL:21690 , eQTL:21685 , eQTL:21686 . Chr.15 : eQTL:21693 , eQTL:21694 , eQTL:21695 . Chr.16 : eQTL:21698 . Chr.18 : eQTL:21701 , eQTL:21703 .
QTL for Muscle pH
Chr.1 : eQTL:21571 , eQTL:21569 , eQTL:21568 , eQTL:21560 , eQTL:21558 , eQTL:21557 , eQTL:21554 . Chr.2 : eQTL:21585 , eQTL:21584 , eQTL:21581 , eQTL:21580 . Chr.3 : eQTL:21604 , eQTL:21605 , eQTL:21606 , eQTL:21603 , eQTL:21600 , eQTL:21601 , eQTL:21602 , eQTL:21599 , eQTL:21590 , eQTL:21592 , eQTL:21588 , eQTL:21589 , eQTL:21587 . Chr.4 : eQTL:21612 , eQTL:21611 . Chr.5 : eQTL:21615 . Chr.6 : eQTL:21635 , eQTL:21634 , eQTL:21625 , eQTL:21622 , eQTL:21621 . Chr.7 : eQTL:21649 , eQTL:21647 , eQTL:21646 , eQTL:21645 . Chr.8 : eQTL:21654 . Chr.9 : eQTL:21662 , eQTL:21661 . Chr.12 : eQTL:21670 . Chr.13 : eQTL:21679 , eQTL:21680 , eQTL:21678 , eQTL:21672 . Chr.14 : eQTL:21688 , eQTL:21687 . Chr.15 : eQTL:21696 .
QTL for Cooking loss
Chr.1 : eQTL:21549 . Chr.2 : eQTL:21578 . Chr.6 : eQTL:21639 , eQTL:21638 , eQTL:21627 , eQTL:21626 . Chr.7 : eQTL:21643 . Chr.14 : eQTL:21683 .
QTL for Meat color
Chr.3 : eQTL:21586 . Chr.7 : eQTL:21651 . Chr.9 : eQTL:21666 . Chr.12 : eQTL:21671 .
QTL for Thawing loss
Chr.3 : eQTL:21608 . Chr.4 : eQTL:21610 . Chr.6 : eQTL:21642 , eQTL:21637 , eQTL:21636 , eQTL:21624 .
QTL/association Reported by chromosomes:
Chr.1 (23) ,
Chr.2 (14) ,
Chr.3 (23) ,
Chr.4 (4) ,
Chr.5 (5) ,
Chr.6 (25) ,
Chr.7 (10) ,
Chr.8 (2) ,
Chr.9 (13) ,
Chr.11 (1) ,
Chr.12 (3) ,
Chr.13 (11) ,
Chr.14 (10) ,
Chr.15 (4) ,
Chr.16 (3) ,
Chr.18 (4) .
Number of gene-based eQTL/associations:
Cite this Dataset :
Animal QTLdb: Dataset from Ponsuksili Siriluck, Murani Eduard, Schwerin Manfred, Schellander Karl, Wimmers Klaus, (2010). Identification of expression QTL (eQTL) of genes expressed in porcine M. longissimus dorsi and associated with meat quality traits.. BMC genomics, 11: 572;
Curated into QTLdb on 2013-08-22. Universal link to this data set:
https://www.animalgenome.org/QTLdb/supp/?t=KwCh4N6LoH
OR
Ponsuksili Siriluck, Murani Eduard, Schwerin Manfred, Schellander Karl, Wimmers Klaus, (2010). Identification of expression QTL (eQTL) of genes expressed in porcine M. longissimus dorsi and associated with meat quality traits.. BMC genomics, 11: 572; DOI: https://dx.doi.org/10.1186/1471-2164-11-572
