A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
DDR2 location ⇒ 4:91535969-91535780   CU582912,CH242-19H12,4:91483054-91606104
(Clone quality: bE19H12 on chr=4; Num_of_Contigs=2; )
DDRGK1   ENSSSCG00000007160 17:34059949-34071350    
DDX1   ENSSSCG00000008619 3:113249413-113258338    
DDX10   ENSSSCG00000015011 9:36203420-36207500   CU930036,CH242-311K23,9:36203127-36208516
(Clone quality: bE311K23 on chr=9; Num_of_Contigs=16; )
DDX16 location ⇒ 7:26749249-26749036   FP067362,CH242-312H17,7:26739079-26761701
(Clone quality: bE312H17 on chr=7; Num_of_Contigs=15; )
DDX16 location ⇒ 7:26753343-26753088   FP067362,CH242-312H17,7:26739079-26761701
(Clone quality: bE312H17 on chr=7; Num_of_Contigs=15; )
DDX16 location ⇒ 7:26992695-26992950 CU326403,CH242-198M20,7:26882096-27123407
(Clone quality: bE198M20 on chr=7; Num_of_Contigs=9; ) 		 
DDX16 location ⇒ 7:27157210-27156955 CU480634,CH242-391N4,7:27128408-27216112
(Clone quality: bE391N4 on chr=7; Num_of_Contigs=11; ) 		 
DDX17 ENSSSCG00000000104 5:5846312-5863355   FP102457,CH242-8D4,5:5845852-5872822
(Clone quality: bE8D4 on chr=5; Num_of_Contigs=3; )
DDX17 location ⇒ 5:5862726-5863190   FP102457,CH242-8D4,5:5845852-5872822
(Clone quality: bE8D4 on chr=5; Num_of_Contigs=3; )
DDX17 location ⇒ 5:5863218-5863280   FP102457,CH242-8D4,5:5845852-5872822
(Clone quality: bE8D4 on chr=5; Num_of_Contigs=3; )
DDX17 location ⇒ 5:5863477-5863558   FP102457,CH242-8D4,5:5845852-5872822
(Clone quality: bE8D4 on chr=5; Num_of_Contigs=3; )
DDX17 location ⇒ 5:5864944-5865020   FP102457,CH242-8D4,5:5845852-5872822
(Clone quality: bE8D4 on chr=5; Num_of_Contigs=3; )
DDX18   ENSSSCG00000015712 15:22118053-22134368 CU406995,CH242-505D21,15:22112976-22359365
(Clone quality: bE505D21 on chr=15; Num_of_Contigs=4; ) 		 
DDX19A   ENSSSCG00000002722 6:9661038-9723349    
DDX20   ENSSSCG00000006783 4:113030664-113041303    
DDX21 ENSSSCG00000010247 14:75186560-75207640    
DDX21 location ⇒ 14:75197778-75197930   CU468175,CH242-355K2,14:75174559-75200454
(Clone quality: bE355K2 on chr=14; Num_of_Contigs=4; )
DDX21 location ⇒ 14:75198298-75198464   CU468175,CH242-355K2,14:75174559-75200454
(Clone quality: bE355K2 on chr=14; Num_of_Contigs=4; )
DDX21 location ⇒ 14:75200113-75200235   CU468175,CH242-355K2,14:75174559-75200454
(Clone quality: bE355K2 on chr=14; Num_of_Contigs=4; )
DDX21 location ⇒ 14:75203359-75203521   CT737244,CH242-205I14,14:75200455-75246574
(Clone quality: bE205I14 on chr=14; Num_of_Contigs=4; )
DDX23   ENSSSCG00000000177 5:13393945-13396478   CU914692,CH242-143P14,5:13374362-13396730
(Clone quality: bE143P14 on chr=5; Num_of_Contigs=6; )
DDX24   ENSSSCG00000002470 7:123662823-123683463   CT990641,CH242-259C22,7:123630146-123710826
(Clone quality: bE259C22 on chr=7; Num_of_Contigs=4; )
DDX26B   ENSSSCG00000012695 X:109148727-109208431    
DDX39 ENSSSCG00000013776 2:57186619-57191123    
DDX3X ENSSSCG00000012252 X:36683848-36697312   CU861899,CH242-15C8,X:36664889-36708001
(Clone quality: bE15C8 on chr=X; Num_of_Contigs=7; )
DDX3X location ⇒ X:36697228-36698032   CU861899,CH242-15C8,X:36664889-36708001
(Clone quality: bE15C8 on chr=X; Num_of_Contigs=7; )
DDX3Y location ⇒ X:36693888-36693959   CU861899,CH242-15C8,X:36664889-36708001
(Clone quality: bE15C8 on chr=X; Num_of_Contigs=7; )
DDX3Y location ⇒ X:36694623-36694773   CU861899,CH242-15C8,X:36664889-36708001
(Clone quality: bE15C8 on chr=X; Num_of_Contigs=7; )
DDX3Y location ⇒ X:36694944-36695116   CU861899,CH242-15C8,X:36664889-36708001
(Clone quality: bE15C8 on chr=X; Num_of_Contigs=7; )
DDX3Y location ⇒ X:36695209-36695324   CU861899,CH242-15C8,X:36664889-36708001
(Clone quality: bE15C8 on chr=X; Num_of_Contigs=7; )
DDX4   ENSSSCG00000016913 16:32373080-32379429   CU929824,CH242-50P12,16:32370998-32380001
(Clone quality: bE50P12 on chr=16; Num_of_Contigs=16; )
DDX42   ENSSSCG00000017289 12:12687830-12748251    
DDX43   ENSSSCG00000004287 1:55472875-55490114    
DDX5 location ⇒ 3:83407590-83407498 CU442746,CH242-376H22,3:83376309-83508514
(Clone quality: bE376H22 on chr=3; Num_of_Contigs=6; ) 		 
DDX5 location ⇒ 3:83407590-83407498 CU442746,CH242-376H22,3:83376309-83508514
(Clone quality: bE376H22 on chr=3; Num_of_Contigs=6; ) 		 
DDX50   ENSSSCG00000010246 14:75136525-75177551    
DDX51   ENSSSCG00000009740 14:23163217-23165107    
DDX53   ENSSSCG00000012169 X:17906742-17908628   CU927956,CH242-262B6,X:17900243-18016361
(Clone quality: bE262B6 on chr=X; Num_of_Contigs=3; )
DDX54   ENSSSCG00000009876 14:39005198-39012435    
DDX55   ENSSSCG00000009771 14:29479472-29498748   CU468658,CH242-245F7,14:29355652-29557150
(Clone quality: bE245F7 on chr=14; Num_of_Contigs=1; )
DDX56   ENSSSCG00000016745 18:49257678-49267034   CU856650,CH242-209B3,18:49245387-49362964
(Clone quality: bE209B3 on chr=18; Num_of_Contigs=3; )
DDX6 ENSSSCG00000015097 9:44619222-44652973   FP089499,CH242-36G7,9:44609302-44750256
(Clone quality: bE36G7 on chr=9; Num_of_Contigs=3; )
DDX6 location ⇒ 9:44619636-44619439   FP089499,CH242-36G7,9:44609302-44750256
(Clone quality: bE36G7 on chr=9; Num_of_Contigs=3; )
DDX6 location ⇒ 9:44619951-44619717   FP089499,CH242-36G7,9:44609302-44750256
(Clone quality: bE36G7 on chr=9; Num_of_Contigs=3; )
DDX6 location ⇒ 9:44621483-44621302   FP089499,CH242-36G7,9:44609302-44750256
(Clone quality: bE36G7 on chr=9; Num_of_Contigs=3; )
DDX6 location ⇒ 9:44650423-44649948   FP089499,CH242-36G7,9:44609302-44750256
(Clone quality: bE36G7 on chr=9; Num_of_Contigs=3; )
DEAF1   ENSSSCG00000012850 2:238775-261809   FP015900,CH242-40P17,2:201823-266668
(Clone quality: bE40P17 on chr=2; Num_of_Contigs=6; )
DECR1   ENSSSCG00000006126 4:47901914-47937394   CU302311,CH242-350B8,4:47872235-47968920
(Clone quality: bE350B8 on chr=4; Num_of_Contigs=3; )
DECR2   ENSSSCG00000007987 3:35462657-35475846   FP103065,CH242-393N23,3:35458755-35481593
(Clone quality: bE393N23 on chr=3; Num_of_Contigs=5; )
Go to records:
1-49, 50-100, 101-150, 151-200, 201-250, 251-300, 301-350, 351-400, 401-450, 451-500, 501-550, 551-600, 601-650, 651-700, 701-750, 751-16

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

© 2003-2025: USA · USDA · NRPSP8 · Program to Accelerate Animal Genomics Applications. Contact: Bioinformatics Team