A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
ssc-mir-1a   ENSSSCG00000019004 17:64096222-64096329   CU607084,CH242-119P9,17:64054787-64103380
(Clone quality: bE119P9 on chr=17; Num_of_Contigs=6; )
ssc-mir-20   ENSSSCG00000019883 11:60972911-60972981   CU019588,CH242-392I14,11:60970571-61005671
(Clone quality: bE392I14 on chr=11; Num_of_Contigs=5; )
ssc-mir-204   ENSSSCG00000019666 1:234511625-234511733   CU855514,CH242-262N8,1:234347018-234529181
(Clone quality: bE262N8 on chr=1; Num_of_Contigs=1; )
ssc-mir-205   ENSSSCG00000018753 9:126011588-126011656   CU856079,CH242-104E19,9:126004916-126014703
(Clone quality: bE104E19 on chr=9; Num_of_Contigs=15; )
ssc-mir-21   ENSSSCG00000018555 12:34201565-34201656   CU463348,CH242-175J3,12:34165606-34300471
(Clone quality: bE175J3 on chr=12; Num_of_Contigs=1; )
ssc-mir-210   ENSSSCG00000019083 2:331299-331396   FP015900,CH242-40P17,2:291676-352927
(Clone quality: bE40P17 on chr=2; Num_of_Contigs=6; )
ssc-mir-214   ENSSSCG00000018758 9:107639153-107639262   CU928940,CH242-125A3,9:107626293-107669381
(Clone quality: bE125A3 on chr=9; Num_of_Contigs=5; )
ssc-mir-215   ENSSSCG00000019865 10:9750609-9750704   CU633420,CH242-481A12,10:9693462-9771575
(Clone quality: bE481A12 on chr=10; Num_of_Contigs=5; )
ssc-mir-216   ENSSSCG00000018640 3:79385092-79385196   FP102674,CH242-30J15,3:79367229-79389480
(Clone quality: bE30J15 on chr=3; Num_of_Contigs=4; )
ssc-mir-216   ENSSSCG00000019836 3:79165852-79165956   CU694666,CH242-112L18,3:79154095-79288674
(Clone quality: bE112L18 on chr=3; Num_of_Contigs=3; )
ssc-mir-217   ENSSSCG00000018569 3:79172584-79172690   CU694666,CH242-112L18,3:79154095-79288674
(Clone quality: bE112L18 on chr=3; Num_of_Contigs=3; )
ssc-mir-217   ENSSSCG00000018713 3:79378361-79378467   FP102674,CH242-30J15,3:79367229-79389480
(Clone quality: bE30J15 on chr=3; Num_of_Contigs=4; )
ssc-mir-221   ENSSSCG00000018698 X:40478094-40478163   CU207321,CH242-186C11,X:40476958-40494909
(Clone quality: bE186C11 on chr=X; Num_of_Contigs=4; )
ssc-mir-224   ENSSSCG00000019411 X:121480634-121480714   FP074856,CH242-266P11,X:121415771-121520462
(Clone quality: bE266P11 on chr=X; Num_of_Contigs=3; )
ssc-mir-23a   ENSSSCG00000019823 2:56861159-56861228   FP016000,CH242-10C10,2:56824783-56952713
(Clone quality: bE10C10 on chr=2; Num_of_Contigs=2; )
ssc-mir-24   ENSSSCG00000018214 2:56860821-56860892   FP016000,CH242-10C10,2:56824783-56952713
(Clone quality: bE10C10 on chr=2; Num_of_Contigs=2; )
ssc-mir-27a   ENSSSCG00000019909 2:56860970-56861051   FP016000,CH242-10C10,2:56824783-56952713
(Clone quality: bE10C10 on chr=2; Num_of_Contigs=2; )
ssc-mir-28   ENSSSCG00000019404 13:95264193-95264278   FP009754,CH242-400C7,13:95255104-95277386
(Clone quality: bE400C7 on chr=13; Num_of_Contigs=12; )
ssc-mir-29b   ENSSSCG00000018108 18:16054349-16054429   CU928631,CH242-250E19,18:16049602-16055752
(Clone quality: bE250E19 on chr=18; Num_of_Contigs=12; )
ssc-mir-29c   ENSSSCG00000019663 9:127174326-127174413   FP089691,CH242-273B10,9:127173594-127190150
(Clone quality: bE273B10 on chr=9; Num_of_Contigs=7; )
ssc-mir-30a   ENSSSCG00000019941 1:53848998-53849104   CU861545,CH242-237H9,1:53836181-53861954
(Clone quality: bE237H9 on chr=1; Num_of_Contigs=5; )
ssc-mir-30b   ENSSSCG00000019231 4:5733584-5733659   CU856307,CH242-233L15,4:5696076-5812744
(Clone quality: bE233L15 on chr=4; Num_of_Contigs=3; )
ssc-mir-30c   ENSSSCG00000019520 1:53819906-53819985   CU914297,CH242-79F11,1:53747101-53830544
(Clone quality: bE79F11 on chr=1; Num_of_Contigs=2; )
ssc-mir-325   ENSSSCG00000018390 X:60496392-60496485   FP085372,CH242-219G1,X:60491134-60501112
(Clone quality: bE219G1 on chr=X; Num_of_Contigs=12; )
ssc-mir-325   ENSSSCG00000019186 X:60552421-60552514 FP015868,CH242-22N6,X:60505843-60630627
(Clone quality: bE22N6 on chr=X; Num_of_Contigs=2; ) 		 
ssc-mir-326   ENSSSCG00000018827 9:9132230-9132320   CU655994,CH242-280C8,9:9107494-9146774
(Clone quality: bE280C8 on chr=9; Num_of_Contigs=8; )
ssc-mir-450   ENSSSCG00000019321 X:108480688-108480793   CU468475,CH242-274C3,X:108471894-108485024
(Clone quality: bE274C3 on chr=X; Num_of_Contigs=6; )
ssc-mir-503   ENSSSCG00000019157 X:108498665-108498773   CU639462,CH242-164F18,X:108497189-108549869
(Clone quality: bE164F18 on chr=X; Num_of_Contigs=3; )
ssc-mir-9-1   ENSSSCG00000019873 4:97531326-97531414   CU468311,CH242-144L15,4:97504804-97533891
(Clone quality: bE144L15 on chr=4; Num_of_Contigs=16; )
ssc-mir-9-1   ENSSSCG00000019875 4:97746791-97746879   CU468654,CH242-228K10,4:97735791-97747657
(Clone quality: bE228K10 on chr=4; Num_of_Contigs=7; )
ssc-mir-9-2   ENSSSCG00000018888 2:85597097-85597183   CU462930,CH242-2C11,2:85577022-85765142
(Clone quality: bE2C11 on chr=2; Num_of_Contigs=1; )
ssc-mir-95   ENSSSCG00000019061 8:3350578-3350658   FP003588,CH242-515K21,8:3329634-3381533
(Clone quality: bE515K21 on chr=8; Num_of_Contigs=11; )
ssc-mir-99b   ENSSSCG00000018735 6:39533216-39533285   CU019573,CH242-21M5,6:39525419-39545846
(Clone quality: bE21M5 on chr=6; Num_of_Contigs=9; )
SSFA2   ENSSSCG00000016013 15:81971040-82009725   CU464031,CH242-439P1,15:81970609-82015581
(Clone quality: bE439P1 on chr=15; Num_of_Contigs=2; )
SSH1   ENSSSCG00000009943 14:42222827-42284518 CT827801,CH242-209H21,14:42218746-42424391
(Clone quality: bE209H21 on chr=14; Num_of_Contigs=7; ) 		 
SSH2 ENSSSCG00000017791 12:43655167-43717242    
SSH3BP1 ENSSSCG00000011062 10:46887977-46960945    
SSH3BP1 location ⇒ 10:46888533-46887597   CU571224,CH242-337N1,10:46866374-46895137
(Clone quality: bE337N1 on chr=10; Num_of_Contigs=9; )
SSH3BP1 location ⇒ 10:46894130-46893943   CU571224,CH242-337N1,10:46866374-46895137
(Clone quality: bE337N1 on chr=10; Num_of_Contigs=9; )
SSH3BP1 location ⇒ 10:46918105-46917927   CU571224,CH242-337N1,10:46899562-46933146
(Clone quality: bE337N1 on chr=10; Num_of_Contigs=9; )
SSH3BP1 location ⇒ 10:47017267-47017505   CU928644,CH242-496K3,10:47009247-47023175
(Clone quality: bE496K3 on chr=10; Num_of_Contigs=7; )
SSLP1_PIG   ENSSSCG00000015219 9:51521016-51527245   CU928873,CH242-5G4,9:51517596-51527834
(Clone quality: bE5G4 on chr=9; Num_of_Contigs=16; )
SSLP1_PIG   ENSSSCG00000011096 10:52933501-52939730   CU928908,CH242-15N1,10:52933263-52941588
(Clone quality: bE15N1 on chr=10; Num_of_Contigs=31; )
SSPN ENSSSCG00000000557 5:46045702-46085232    
SSPN location ⇒ 5:46045805-46045982   CU927975,CH242-434F9,5:46045299-46055495
(No clone quality info on )
SSPN location ⇒ 5:46078329-46078415   CU927975,CH242-434F9,5:46073641-46101865
(No clone quality info on )
SSPN location ⇒ 5:46084810-46085232   CU927975,CH242-434F9,5:46073641-46101865
(No clone quality info on )
SSR1   ENSSSCG00000001022 7:4633365-4654265   CU469365,CH242-149A19,7:4528264-4656133
(Clone quality: bE149A19 on chr=7; Num_of_Contigs=3; )
SSR2   ENSSSCG00000006501 4:97957239-97968450   CU151868,CH242-286M6,4:97945564-98074701
(Clone quality: bE286M6 on chr=4; Num_of_Contigs=4; )
SSR4   ENSSSCG00000012784 X:122649704-122653808   CU915581,CH242-139K22,X:122611684-122679782
(Clone quality: bE139K22 on chr=X; Num_of_Contigs=13; )
Go to records:
1-49, 50-100, 101-150, 151-200, 201-250, 251-300, 301-350, 351-400, 401-450, 451-500, 501-550, 551-600, 601-650, 651-700, 701-750, 751-800, 801-850, 851-900, 901-950, 951-1000, 1001-1050, 1051-1100, 1101-1150, 1151-1200, 1201-1250, 1251-1300, 1301-1350, 1351-1400, 1401-1450, 1451-1500, 1501-1550, 1551-1600, 1601-1650, 1651-1700, 1701-1750, 1751-1800, 1801-1850, 1851-1900, 1901-1950, 1951-2000, 2001-2050, 2051-2100, 2101-2150, 2151-2200, 2201-2250, 2251-2300, 2301-2350, 2351-2400, 2401-2450, 2451-2500, 2501-2550, 2551-2600, 2601-16

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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