A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Records 2001 - 2100:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
CAMK1G   ENSSSCG00000015619 9:125755932-125772992    
CAMK2A ENSSSCG00000014443 2:136606174-136697322    
CAMK2B   ENSSSCG00000016748 18:49486662-49498903    
CAMK2D   ENSSSCG00000009123 8:93598105-93903603    
CAMK2G ENSSSCG00000010311 14:79839232-79894990    
CAMK2N1   ENSSSCG00000003502 6:54051454-54051618   FP102733,CH242-56I17,6:54050937-54053068
(Clone quality: bE56I17 on chr=6; Num_of_Contigs=8; )
CAMK4   ENSSSCG00000014201 2:104603820-104824938    
CAMKK1   ENSSSCG00000017873 12:47261846-47267888    
CAMKK2   ENSSSCG00000009815 14:31348504-31405079    
CAMLG ENSSSCG00000014306 2:124715771-124718249   CU862042,CH242-222J18,2:124705772-124719510
(Clone quality: bE222J18 on chr=2; Num_of_Contigs=7; )
CAMP ENSSSCG00000011349 13:26043606-26045922   FP102065,CH242-145E9,13:26011061-26058464
(Clone quality: bE145E9 on chr=13; Num_of_Contigs=12; )
CAMSAP1   ENSSSCG00000005753 1:289692632-289700061    
CAMTA2   ENSSSCG00000017902 12:49129543-49143792   FP015831,CH242-271O18,12:49076321-49169107
(Clone quality: bE271O18 on chr=12; Num_of_Contigs=4; )
CAND2   ENSSSCG00000011582 13:56984369-57012391   CU928558,CH242-268K10,13:56979951-57068856
(Clone quality: bE268K10 on chr=13; Num_of_Contigs=3; )
CANX ENSSSCG00000014020 2:68224484-68259810    
CAP1 ENSSSCG00000003672 6:66065148-66073853    
CAP1 ENSSSCG00000003672 6:66065148-66073853    
CAP1 ENSSSCG00000006693 4:103708512-103740596   CU467072,CH242-100P4,4:103582921-103758989
(Clone quality: bE100P4 on chr=4; Num_of_Contigs=2; )
CAP1 ENSSSCG00000006693 4:103708512-103740596   CU467072,CH242-100P4,4:103582921-103758989
(Clone quality: bE100P4 on chr=4; Num_of_Contigs=2; )
CAP2   ENSSSCG00000001068 7:13773929-13891161    
CAPG   ENSSSCG00000008239 3:54148993-54163461   CU951451,CH242-157C24,3:54090565-54166505
(Clone quality: bE157C24 on chr=3; Num_of_Contigs=5; )
CAPN1 ENSSSCG00000012999 2:5397982-5423807 CU457406,CH242-284K16,2:5352106-5575890
(Clone quality: bE284K16 on chr=2; Num_of_Contigs=20; ) 		 
CAPN11   ENSSSCG00000001698 7:45697249-45712418 CR956360,CH242-245E12,7:45529239-45714745
(No clone quality info on bE245E12) 		 
CAPN12   ENSSSCG00000002967 6:32817428-32829624    
CAPN3 ENSSSCG00000004728 1:135190712-135267979    
CAPN5   ENSSSCG00000014875 9:11085353-11121685    
CAPN6   ENSSSCG00000012584 X:89158081-89186799    
CAPN9   ENSSSCG00000010182 14:61911963-61952789    
CAPRIN1   ENSSSCG00000013305 2:25242333-25284579 CU929607,CH242-257K17,2:25128827-25332127
(Clone quality: bE257K17 on chr=2; Num_of_Contigs=6; ) 		 
CAPS   ENSSSCG00000013532 2:49553049-49554774   FP089464,CH242-231P22,2:49500853-49563374
(Clone quality: bE231P22 on chr=2; Num_of_Contigs=4; )
CAPS2   ENSSSCG00000000517 5:38550708-38587631    
CAPSL   ENSSSCG00000016833 16:18681789-18777615    
CAPZA1   ENSSSCG00000006775 4:112156529-112274258    
CAPZA3   ENSSSCG00000000589 5:51989283-51990179   CU457757,CH242-219O8,5:51933888-52027325
(Clone quality: bE219O8 on chr=5; Num_of_Contigs=1; )
CAPZB   ENSSSCG00000003493 6:53283378-53317892    
CAR ENSSSCG00000012012 13:131074034-131090971   CU606918,CH242-163L22,13:131072906-131111271
(Clone quality: bE163L22 on chr=13; Num_of_Contigs=12; )
CARHSP1 ENSSSCG00000007911 3:29954006-29965396   FP089531,CH242-200J6,3:29932646-29993310
(Clone quality: bE200J6 on chr=3; Num_of_Contigs=7; )
CARM1   ENSSSCG00000013633 2:52753919-52769313    
CARM1L   ENSSSCG00000005226 1:228996562-229102294    
CARS   ENSSSCG00000012857 2:449200-523057    
CARS2   ENSSSCG00000009547 11:77492603-77728401    
CARTPT   ENSSSCG00000016972 16:45371138-45373217   CU915349,CH242-35O2,16:45343637-45377305
(Clone quality: bE35O2 on chr=16; Num_of_Contigs=7; )
CASC1   ENSSSCG00000000562 5:47089015-47089290   CU639400,CH242-190I20,5:47088535-47092126
(Clone quality: bE190I20 on chr=5; Num_of_Contigs=21; )
CASC3   ENSSSCG00000017477 12:19950609-19970663    
CASC4   ENSSSCG00000004693 1:133305454-133347944   CU855673,CH242-6A19,1:133304686-133359858
(Clone quality: bE6A19 on chr=1; Num_of_Contigs=6; )
CASC5   ENSSSCG00000004769 1:137207018-137209484   CU469090,CH242-416D6,1:137205926-137211863
(Clone quality: bE416D6 on chr=1; Num_of_Contigs=22; )
CASD1   ENSSSCG00000015327 9:69522303-69611149    
CASK ENSSSCG00000009267 8:119975507-119979593    
CASK ENSSSCG00000012253 X:36799905-37083358    
CASP10 ENSSSCG00000015934 15:71377171-71407147    
CASP14 ENSSSCG00000013835 2:60189732-60192718   CU915718,CH242-156C19,2:60173510-60199107
(Clone quality: bE156C19 on chr=2; Num_of_Contigs=6; )
CASP2 ENSSSCG00000016464 18:5944416-5964015   CU928380,CH242-107B19,18:5868328-5998133
(Clone quality: bE107B19 on chr=18; Num_of_Contigs=4; )
CASP3 ENSSSCG00000015783 15:42806968-42815526    
CASP4 ENSSSCG00000014997 9:34926978-34959053    
CASP5 ENSSSCG00000014997 9:34926978-34959053    
CASP6 ENSSSCG00000009140 8:96724720-96731855    
CASP7 ENSSSCG00000010642 14:129889934-129921308   CU012038,CH242-328H13,14:129818796-130012065
(Clone quality: bE328H13 on chr=14; Num_of_Contigs=2; )
CASP8 ENSSSCG00000004331 1:60927081-60946661   CU468058,CH242-196P17,1:60913615-60954877
(Clone quality: bE196P17 on chr=1; Num_of_Contigs=13; )
CASP8 ENSSSCG00000016106 15:98741656-98744520   CU928282,CH242-38C15,15:98737786-98744766
(Clone quality: bE38C15 on chr=15; Num_of_Contigs=9; )
CASP9 ENSSSCG00000003460 6:51246493-51268853    
CASQ1 ENSSSCG00000006390 4:93723965-93733955 CU138477,CH242-105O19,4:93708821-93889364
(Clone quality: bE105O19 on chr=4; Num_of_Contigs=5; ) 		 
CASQ2   ENSSSCG00000006745 4:109235600-109298140   CU407089,CH242-512E9,4:109180674-109298819
(Clone quality: bE512E9 on chr=4; Num_of_Contigs=2; )
CASR   ENSSSCG00000011878 13:104117834-104144972   CU694886,CH242-322E12,13:103947006-104157780
(Clone quality: bE322E12 on chr=13; Num_of_Contigs=1; )
CASS4   ENSSSCG00000007495 17:59525908-59565760 CR956640,CH242-155M9,17:59463698-59643740
(No clone quality info on bE155M9) 		 
CAST ENSSSCG00000014170 2:92291501-92435874    
CAT ENSSSCG00000000764 5:65172375-65180689    
CAT ENSSSCG00000000766 5:65417079-65432963   CU467800,CH242-7B3,5:65416584-65439865
(Clone quality: bE7B3 on chr=5; Num_of_Contigs=13; )
CAT ENSSSCG00000006987 17:5032161-5053065   CU682348,CH242-166L11,17:5021825-5054296
(Clone quality: bE166L11 on chr=17; Num_of_Contigs=5; )
CAT ENSSSCG00000009324 11:6079920-6092468    
CAT ENSSSCG00000009925 14:41158158-41210960   CU640887,CH242-377K8,14:41152094-41308016
(Clone quality: bE377K8 on chr=14; Num_of_Contigs=2; )
CAT ENSSSCG00000010102 14:51729892-51989336    
CAT ENSSSCG00000013302 2:24918178-24957775    
CAT4 ENSSSCG00000010102 14:51729892-51989336    
CATSPER1   ENSSSCG00000012959 2:4686131-4694266    
CATSPER2   ENSSSCG00000004701 1:133890106-133904423   CU861634,CH242-463N18,1:133885270-133939793
(Clone quality: bE463N18 on chr=1; Num_of_Contigs=7; )
CATSPERB   ENSSSCG00000002442 7:121114470-121206370    
CAV1 ENSSSCG00000000763 5:65002112-65141065    
CAV1 ENSSSCG00000011455 13:29986203-30144848    
CAV1 ENSSSCG00000012298 X:42760501-42794033    
CAV1 ENSSSCG00000016634 18:28433047-28467889    
CAV2   ENSSSCG00000016635 18:28484473-28492739   CU855654,CH242-299F11,18:28464957-28514429
(Clone quality: bE299F11 on chr=18; Num_of_Contigs=4; )
CBARA1   ENSSSCG00000010289 14:78429785-78706911    
CBFA2T2 ENSSSCG00000007266 17:39066076-39078886    
CBFA2T3 ENSSSCG00000002648 6:396805-408185   FP102571,CH242-151H1,6:395325-411339
(Clone quality: bE151H1 on chr=6; Num_of_Contigs=15; )
CBL ENSSSCG00000003083 6:35768919-35784680   CU459172,CH242-480J10,6:35756411-35818672
(Clone quality: bE480J10 on chr=6; Num_of_Contigs=12; )
CBL ENSSSCG00000010494 14:111954319-112193346    
CBL ENSSSCG00000012160 X:15098687-15256316    
CBL ENSSSCG00000015115 9:45017359-45118067    
CBLB ENSSSCG00000009932 14:41586464-41599398   CT737283,CH242-112F16,14:41491728-41660145
(Clone quality: bE112F16 on chr=14; Num_of_Contigs=1; )
CBLC   ENSSSCG00000003083 6:35768919-35784680   CU459172,CH242-480J10,6:35756411-35818672
(Clone quality: bE480J10 on chr=6; Num_of_Contigs=12; )
CBLN2   ENSSSCG00000004877 1:158165345-158168994   CU062561,CH242-394J16,1:158142954-158237595
(Clone quality: bE394J16 on chr=1; Num_of_Contigs=4; )
CBLN3   ENSSSCG00000001985 7:81206829-81209341   CT997804,CH242-280B15,7:81187212-81281808
(Clone quality: bE280B15 on chr=7; Num_of_Contigs=5; )
CBLN4   ENSSSCG00000007490 17:59209904-59218285 CR956373,CH242-69F10,17:59033051-59220949
(No clone quality info on bE69F10) 		 
CBR3   ENSSSCG00000012053 13:140242206-140251911   CU915666,CH242-280H1,13:140230630-140261298
(Clone quality: bE280H1 on chr=13; Num_of_Contigs=9; )
CBR4   ENSSSCG00000009717 14:20642776-20662060   CU062559,CH242-374J1,14:20564388-20702379
(Clone quality: bE374J1 on chr=14; Num_of_Contigs=3; )
CBX1   ENSSSCG00000017529 12:21912862-21939181    
CBX3 ENSSSCG00000016711 18:45087736-45095271   FP236743,CH242-201O19,18:45085661-45097060
(Clone quality: bE201O19 on chr=18; Num_of_Contigs=8; )
CBX4   ENSSSCG00000017160 12:1631211-1636644 CU464073,CH242-396G1,12:1427255-1662757
(Clone quality: bE396G1 on chr=3; Num_of_Contigs=9; ) 		 
CBX5   ENSSSCG00000000282 5:17804056-17815030    
CBX7   ENSSSCG00000000090 5:5348860-5377673    
Go to records:
1-100

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

© 2003-2025: USA · USDA · NRPSP8 · Program to Accelerate Animal Genomics Applications. Contact: Bioinformatics Team