mrkdist2p

Displays the two-points distance matrix using the specified mapping function (h/k).

Synopsis:

The mrkdist2p command is invoked as either one of :

• mrkdist2p Options
• mrkdist2p Unit

Description:

mrkdist2p prints the two-points distance estimation using either Haldane (h) or Kosambi (k) mapping function. For radiated hybrid data, Ray distances are always used, independently of the argument (which must nevertheless be given).

Arguments:

• Options : -u to obtain the synopsys of the normal use, -h to print a one line description, -H to print a short help.
• Unit: may either h (Haldane) or k (Kosambi).

Returns:

nothing.

Example:

CG> dsload Data/bc.cg
{1 f2 backcross 20 208 /home/tschiex/Dev/carthagene/doc/user/exemple/Data/b...
CG> group 0.1 9

Linkage Groups :
---------------:
LOD threshold=9.00
Distance threshold=10.00:

 Group ID : Marker ID List ...
        1 : 17 19 20 18
        2 : 14
        3 : 11 13 12 16 15
        4 : 10
        5 : 2 4 3 7 6 5 9 8
        6 : 1
6
CG> mrkselset [groupget 3]

CG> mrkdist2p k

Print two points distance matrices of the loci selection :
---------------------------------------------------------:

Data Set Number  1 :
                  MS11  MS13  MS12  MS16  MS15
                 ------------------------------
           MS11 |------  7.8  10.3  22.5  16.2
           MS13 |  7.8 ------  0.0  14.5  15.5
           MS12 | 10.3   0.0 ------  8.3   3.5
           MS16 | 22.5  14.5   8.3 ------  4.9
           MS15 | 16.2  15.5   3.5   4.9 ------

See also:

• mrklod2p (2.3.7)
• mrkfr2p (2.3.3)